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GPHN gephyrin [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100586488, updated on 21-Jul-2018

Summary

Gene symbol
GPHN
Gene description
gephyrin
See related
Ensembl:ENSNLEG00000000447
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs

Genomic context

See GPHN in Genome Data Viewer
Location:
chromosome: 1a
Exon count:
27
Annotation release Status Assembly Chr Location
102 current Nleu_3.0 (GCF_000146795.2) 1a NC_019816.1 (98828650..99551049)

Chromosome 1a - NC_019816.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105739247 Neighboring gene uncharacterized protein C14orf53 homolog Neighboring gene probable ribosome biogenesis protein RLP24 pseudogene Neighboring gene splicing factor 3B subunit 4-like Neighboring gene family with sequence similarity 71 member D Neighboring gene membrane palmitoylated protein 5

Genomic regions, transcripts, and products

Genomic Sequence:
NC_019816.1 Chromosome 1a Reference Nleu_3.0

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nleu_3.0

Genomic

  1. NC_019816.1 Reference Nleu_3.0

    Range
    98828650..99551049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012504346.1XP_012359800.1  gephyrin isoform X1

    See identical proteins and their annotated locations for XP_012359800.1

    Conserved Domains (3) summary
    COG0303
    Location:367776
    MoeA; Molybdopterin biosynthesis enzyme [Coenzyme transport and metabolism]
    cd00886
    Location:15182
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:373779
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...
  2. XM_004087164.2XP_004087212.1  gephyrin isoform X2

    See identical proteins and their annotated locations for XP_004087212.1

    Related
    ENSNLEP00000046705.1, ENSNLET00000053239.1
    Conserved Domains (2) summary
    cd00886
    Location:15182
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:373779
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...
  3. XM_012504348.1XP_012359802.1  gephyrin isoform X5

    See identical proteins and their annotated locations for XP_012359802.1

    Related
    ENSNLEP00000030746.1, ENSNLET00000035385.1
    Conserved Domains (2) summary
    cd00886
    Location:15182
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:359765
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...
  4. XM_012504347.1XP_012359801.1  gephyrin isoform X4

    See identical proteins and their annotated locations for XP_012359801.1

    Conserved Domains (2) summary
    cd00886
    Location:15169
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:360766
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...
  5. XM_004087163.2XP_004087211.1  gephyrin isoform X6

    See identical proteins and their annotated locations for XP_004087211.1

    Conserved Domains (2) summary
    cd00886
    Location:15169
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:327733
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...
  6. XM_004087165.2XP_004087213.1  gephyrin isoform X7

    See identical proteins and their annotated locations for XP_004087213.1

    Conserved Domains (2) summary
    cd00886
    Location:15138
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:296702
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...
  7. XM_003263586.3XP_003263634.1  gephyrin isoform X3

    See identical proteins and their annotated locations for XP_003263634.1

    Related
    ENSNLEP00000000592.3, ENSNLET00000000632.3
    Conserved Domains (2) summary
    cd00886
    Location:15169
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:360766
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...
  8. XM_004087166.2XP_004087214.1  gephyrin isoform X8

    See identical proteins and their annotated locations for XP_004087214.1

    Related
    ENSNLEP00000037186.1, ENSNLET00000032976.1
    Conserved Domains (2) summary
    cd00887
    Location:250656
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...
    cl00451
    Location:159
    MoCF_BD; MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
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