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TFCP2 transcription factor CP2 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100584849, updated on 8-Mar-2024
Gene symbol
TFCP2
Gene description
transcription factor CP2
See related
EnsemblRapid:ENSNLEG00000017779
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
all
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Try the new Transcripts and proteins table
See TFCP2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 8 NC_044388.1 (1001627..1079486)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 8 NC_019823.1 (892818..970650)

Chromosome 8 - NC_044388.1Genomic Context describing neighboring genes Neighboring gene DAZ associated protein 2 Neighboring gene POU class 6 homeobox 1 Neighboring gene U6 spliceosomal RNA Neighboring gene prohibitin pseudogene Neighboring gene cysteine and serine rich nuclear protein 2 Neighboring gene LETM1 domain containing 1 Neighboring gene U6 spliceosomal RNA

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
alpha-globin transcription factor CP2

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044388.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    1001627..1079486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003252135.4 → XP_003252183.1  alpha-globin transcription factor CP2 isoform X1

    See identical proteins and their annotated locations for XP_003252183.1

    UniProtKB/TrEMBL
    G1S7V0
    Related
    ENSNLEP00000021589.1, ENSNLET00000022681.4
    Conserved Domains (2) summary
    cd09589
    Location:329 → 395
    SAM_TFCP2; SAM domain of TFCP2 transcription factors
    pfam04516
    Location:52 → 259
    CP2; CP2 transcription factor

  2. XM_012508397.2 → XP_012363851.1  alpha-globin transcription factor CP2 isoform X2

    See identical proteins and their annotated locations for XP_012363851.1

    Related
    ENSNLEP00000037263.1, ENSNLET00000053282.2
    Conserved Domains (2) summary
    cd09589
    Location:329 → 395
    SAM_TFCP2; SAM domain of TFCP2 transcription factors
    pfam04516
    Location:52 → 259
    CP2; CP2 transcription factor

  3. XM_030816542.1 → XP_030672402.1  alpha-globin transcription factor CP2 isoform X3

    Conserved Domains (2) summary
    cd09589
    Location:231 → 297
    SAM_TFCP2; SAM domain of TFCP2 transcription factors
    pfam04516
    Location:10 → 161
    CP2; CP2 transcription factor
Nucleotide Protein
Heading Accession and Version

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