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LOC100578450 histone-lysine N-methyltransferase SETD2 [ Apis mellifera (honey bee) ]

Gene ID: 100578450, updated on 25-Jan-2024

Summary

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Gene symbol
LOC100578450
Gene description
histone-lysine N-methyltransferase SETD2
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB51706
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Genomic context

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Location:
chromosome: LG8
Exon count:
14
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG8 NC_037645.1 (11784147..11792309, complement)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG8 NC_007077.3 (12627105..12633312, complement)

Linkage Group LG8 - NC_037645.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102656541 Neighboring gene activating signal cointegrator 1 complex subunit 1 Neighboring gene rootletin Neighboring gene NADPH--cytochrome P450 reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase SETD2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037645.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    11784147..11792309 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026442528.1 → XP_026298313.1  histone-lysine N-methyltransferase SETD2 isoform X2

    UniProtKB/TrEMBL
    A0A7M7MMU9, A0A8B8H408
    Conserved Domains (5) summary
    smart00570
    Location:384 → 437
    AWS; associated with SET domains
    smart00317
    Location:441 → 554
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    smart00508
    Location:562 → 578
    PostSET; Cysteine-rich motif following a subset of SET domains
    pfam00397
    Location:1107 → 1136
    WW; WW domain
    pfam08236
    Location:1301 → 1377
    SRI; SRI (Set2 Rpb1 interacting) domain

  2. XM_003251387.4 → XP_003251435.2  histone-lysine N-methyltransferase SETD2 isoform X1

    UniProtKB/TrEMBL
    A0A7M7GF28, A0A8B6XY71
    Conserved Domains (5) summary
    smart00570
    Location:384 → 437
    AWS; associated with SET domains
    smart00317
    Location:441 → 554
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    smart00508
    Location:562 → 578
    PostSET; Cysteine-rich motif following a subset of SET domains
    pfam00397
    Location:1107 → 1136
    WW; WW domain
    pfam08236
    Location:1301 → 1389
    SRI; SRI (Set2 Rpb1 interacting) domain
Nucleotide Protein Strain
Heading Accession and Version

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