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LOC100572746 gastrula zinc finger protein XlCGF57.1 [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100572746, updated on 7-Dec-2023
Gene symbol
LOC100572746
Gene description
gastrula zinc finger protein XlCGF57.1
See related
EnsemblRapid:LOC100572746
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
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See LOC100572746 in Genome Data Viewer
Location:
chromosome: A1
Exon count:
3
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A1 NC_042494.1 (45982292..45986170)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003384495.1 (10354..14008)

Chromosome A1 - NC_042494.1Genomic Context describing neighboring genes Neighboring gene protein Wnt-2 Neighboring gene sorting nexin-22 Neighboring gene caltractin-like Neighboring gene multiple C2 domain and transmembrane region protein Neighboring gene uncharacterized LOC107884905 Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs adt-1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
gastrula zinc finger protein XlCGF57.1; zinc finger protein 875

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042494.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    45982292..45986170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003247473.4 → XP_003247521.1  gastrula zinc finger protein XlCGF57.1 isoform X1

    See identical proteins and their annotated locations for XP_003247521.1

    UniProtKB/TrEMBL
    A0A8R2FBR4
    Related
    XP_003247521.1, XM_003247473.4
    Conserved Domains (1) summary
    sd00017
    Location:251 → 271
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_008189252.3 → XP_008187474.1  gastrula zinc finger protein XlCGF57.1 isoform X1

    See identical proteins and their annotated locations for XP_008187474.1

    UniProtKB/TrEMBL
    A0A8R2FBR4
    Related
    XP_008187474.1, XM_008189252.3
    Conserved Domains (1) summary
    sd00017
    Location:251 → 271
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_016807993.2 → XP_016663482.1  zinc finger protein 875 isoform X2

    UniProtKB/TrEMBL
    A0A8R2D6X0
    Related
    XP_016663482.1, XM_016807993.2
    Conserved Domains (1) summary
    sd00017
    Location:208 → 228
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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