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tfcp2 transcription factor CP2 [ Anolis carolinensis (green anole) ]

Gene ID: 100566598, updated on 8-Mar-2024
Gene symbol
tfcp2
Gene description
transcription factor CP2
See related
Ensembl:ENSACAG00000012289
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
all
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Try the new Transcripts and proteins table
See tfcp2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) Unplaced Scaffold NW_026943830.1 (1274217..1321513, complement)
102 previous assembly AnoCar2.0 (GCF_000090745.1) 2 NC_014777.1 (67457517..67504869, complement)

NW_026943830.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 11 member 2 Neighboring gene LETM1 domain containing 1 Neighboring gene cysteine and serine rich nuclear protein 2 Neighboring gene uncharacterized LOC134294771 Neighboring gene POU class 6 homeobox 1 Neighboring gene uncharacterized LOC134294772 Neighboring gene DAZ associated protein 2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
alpha-globin transcription factor CP2

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NW_026943830.1 Reference rAnoCar3.1.pri

    Range
    1274217..1321513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008103531.3 → XP_008101738.1  alpha-globin transcription factor CP2

    See identical proteins and their annotated locations for XP_008101738.1

    UniProtKB/TrEMBL
    A0A803T2X1, G1KM92
    Related
    ENSACAP00000012164.3
    Conserved Domains (2) summary
    cd09589
    Location:329 → 395
    SAM_TFCP2; SAM domain of TFCP2 transcription factors
    pfam04516
    Location:52 → 257
    CP2; CP2 transcription factor
Nucleotide Protein
Heading Accession and Version

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