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STX16-NPEPL1 STX16-NPEPL1 readthrough (NMD candidate) [ Homo sapiens (human) ]

Gene ID: 100534593, updated on 14-May-2022

Summary

Official Symbol
STX16-NPEPL1provided by HGNC
Official Full Name
STX16-NPEPL1 readthrough (NMD candidate)provided by HGNC
Primary source
HGNC:HGNC:41993
See related
Ensembl:ENSG00000254995 AllianceGenome:HGNC:41993
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally occurring read-through transcription between the neighboring syntaxin 16 (STX16) and aminopeptidase-like 1 (NPEPL1) genes on chromosome 20. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Mar 2011]
Expression
Ubiquitous expression in spleen (RPKM 20.8), fat (RPKM 17.6) and 25 other tissues See more
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Genomic context

See STX16-NPEPL1 in Genome Data Viewer
Location:
20q13.32
Exon count:
23
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (58651253..58715844)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (60433317..60498449)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (57226309..57290900)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1711 Neighboring gene uncharacterized LOC107985410 Neighboring gene syntaxin 16 Neighboring gene aminopeptidase like 1 Neighboring gene uncharacterized LOC124904942 Neighboring gene piezo type mechanosensitive ion channel component 1 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037945.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB209296, AL050327, AL139349
    Related
    ENST00000530122.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    58651253..58715844
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    60433317..60498449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)