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glur2a glutamate receptor subunit 2A [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100534587, updated on 12-Sep-2018

Summary

Gene symbol
glur2a
Gene description
glutamate receptor subunit 2A
See related
Ensembl:ENSONIG00000016067
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
fGluR2A; fGluR2Ac
Expression
Biased expression in brain (RPKM 27.1), whole embryo (RPKM 8.1) and 1 other tissue See more

Genomic context

See glur2a in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
21
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG6 NC_031971.2 (1929376..2052596, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG6 NC_031971.1 (41413635..41536857, complement)

Linkage Group LG6 - NC_031971.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112847023 Neighboring gene uncharacterized LOC109202622 Neighboring gene proline-rich protein 36-like Neighboring gene uncharacterized LOC106096957 Neighboring gene glycine receptor subunit beta Neighboring gene NADH:ubiquinone oxidoreductase core subunit S8

Genomic regions, transcripts, and products

Expression

  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
glutamate receptor subunit 2A
Names
glutamate receptor subunit 2Ac

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001279550.1NP_001266479.1  glutamate receptor subunit 2A precursor

    See identical proteins and their annotated locations for NP_001266479.1

    Status: PROVISIONAL

    Source sequence(s)
    L46366
    UniProtKB/TrEMBL
    Q91227
    Conserved Domains (4) summary
    cd13715
    Location:417798
    PBP2_iGluR_AMPA; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtypes of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:549828
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:61384
    ANF_receptor; Receptor family ligand binding region
    cl10011
    Location:34402
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily

RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031971.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    1929376..2052596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005457612.3XP_005457669.1  glutamate receptor subunit 2A isoform X3

    UniProtKB/TrEMBL
    I3KGJ6
    Related
    ENSONIP00000020241
    Conserved Domains (4) summary
    cd13715
    Location:417795
    PBP2_iGluR_AMPA; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtypes of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:549828
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:61384
    ANF_receptor; Receptor family ligand binding region
    cl10011
    Location:34402
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
  2. XM_005457610.3XP_005457667.1  glutamate receptor subunit 2A isoform X1

    UniProtKB/TrEMBL
    I3KGJ5
    Related
    ENSONIP00000020240
    Conserved Domains (4) summary
    cd13715
    Location:417795
    PBP2_iGluR_AMPA; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtypes of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:549828
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:61384
    ANF_receptor; Receptor family ligand binding region
    cl10011
    Location:34402
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
  3. XM_005457611.3XP_005457668.1  glutamate receptor subunit 2A isoform X2

    Conserved Domains (4) summary
    cd13715
    Location:417798
    PBP2_iGluR_AMPA; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtypes of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:549828
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:61384
    ANF_receptor; Receptor family ligand binding region
    cl10011
    Location:34402
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
  4. XM_019359414.2XP_019214959.1  glutamate receptor subunit 2A isoform X4

RNA

  1. XR_003220294.1 RNA Sequence

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