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P2RX5-TAX1BP3 P2RX5-TAX1BP3 readthrough (NMD candidate) [ Homo sapiens (human) ]

Gene ID: 100533970, updated on 13-May-2022

Summary

Official Symbol
P2RX5-TAX1BP3provided by HGNC
Official Full Name
P2RX5-TAX1BP3 readthrough (NMD candidate)provided by HGNC
Primary source
HGNC:HGNC:49191
See related
Ensembl:ENSG00000257950 AllianceGenome:HGNC:49191
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
P2X5; P2RX5
Summary
This locus represents naturally occurring read-through transcription between the neighboring P2RX5 (purinergic receptor P2X, ligand-gated ion channel, 5) and TAX1BP3 (Tax1 binding protein 3) genes on chromosome 17. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Mar 2011]
Expression
Ubiquitous expression in stomach (RPKM 14.5), lymph node (RPKM 14.1) and 25 other tissues See more
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Genomic context

See P2RX5-TAX1BP3 in Genome Data Viewer
Location:
17p13.2
Exon count:
15
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (3662893..3696404, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (3551945..3584998, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (3566187..3599698, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene pterin-4 alpha-carbinolamine dehydratase 2 pseudogene Neighboring gene sedoheptulokinase Neighboring gene uncharacterized LOC105371493 Neighboring gene cystinosin, lysosomal cystine transporter Neighboring gene ribosomal protein L21 pseudogene 125 Neighboring gene Tax1 binding protein 3 Neighboring gene ER membrane protein complex subunit 6 Neighboring gene purinergic receptor P2X 5 Neighboring gene integrin subunit alpha E Neighboring gene Sharpr-MPRA regulatory region 669 Neighboring gene histone H3 associated protein kinase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • ATP receptor
  • P2X purinoceptor 5
  • Purinergic receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037928.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB209623, AC027796, AC132942
    Related
    ENST00000550383.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    3662893..3696404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    3551945..3584998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)