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LOC100533497 cocaine- and amphetamine-regulated transcript ch3 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100533497, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100533497
Gene description
cocaine- and amphetamine-regulated transcript ch3
See related
EnsemblRapid:ENSORLG00000023123
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 3 NC_019861.2 (4219118..4220074, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 3 NC_019861.1 (2404237..2405193, complement)

Chromosome 3 - NC_019861.2Genomic Context describing neighboring genes Neighboring gene tumor protein p53 binding protein, 1 Neighboring gene tubulin gamma complex component 4 Neighboring gene CDKN2A interacting protein Neighboring gene uncharacterized LOC110017042 Neighboring gene transfer RNA glutamine (anticodon CUG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple cocaine- and amphetamine-regulated transcript (CART) genes in medaka, Oryzias latipes: cloning, tissue distribution and effect of starvation. Murashita K, et al. Gen Comp Endocrinol, 2011 Feb 1. PMID 21078323
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neuropeptide hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adult feeding behavior IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of appetite IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of MAPK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cocaine- and amphetamine-regulated transcript ch3
Names
cart ch3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001204779.1 → NP_001191708.1  cocaine- and amphetamine-regulated transcript ch3 precursor

    See identical proteins and their annotated locations for NP_001191708.1

    Status: PROVISIONAL

    Source sequence(s)
    AB568292
    UniProtKB/TrEMBL
    A0A3B3IDD1, A0A3P9IZ39, E3WET5
    Related
    ENSORLP00000042080.1, ENSORLT00000039654.2
    Conserved Domains (1) summary
    pfam06373
    Location:57 → 125
    CART; Cocaine and amphetamine regulated transcript protein (CART)

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019861.2 Reference ASM223467v1 Primary Assembly

    Range
    4219118..4220074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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