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DNAAF4-CCPG1 DNAAF4-CCPG1 readthrough (NMD candidate) [ Homo sapiens (human) ]

Gene ID: 100533483, updated on 25-Jan-2022

Summary

Official Symbol
DNAAF4-CCPG1provided by HGNC
Official Full Name
DNAAF4-CCPG1 readthrough (NMD candidate)provided by HGNC
Primary source
HGNC:HGNC:43019
See related
Ensembl:ENSG00000261771 AllianceGenome:HGNC:43019
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DYX1C1-CCPG1
Summary
This locus represents naturally occurring read-through transcription between the neighboring dyslexia susceptibility 1 candidate 1 (DYX1C1) and cell cycle progression 1 (CCPG1) genes on chromosome 15. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Mar 2011]
Expression
Ubiquitous expression in thyroid (RPKM 44.1), gall bladder (RPKM 27.8) and 25 other tissues See more
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Genomic context

See DNAAF4-CCPG1 in Genome Data Viewer
Location:
15q21.3
Exon count:
16
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (55355223..55498584, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (55647421..55790782, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene RAB27A, member RAS oncogene family Neighboring gene Sharpr-MPRA regulatory region 6285 Neighboring gene PIGB opposite strand 1 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class B Neighboring gene Sharpr-MPRA regulatory region 6559 Neighboring gene cell cycle progression 1 Neighboring gene microRNA 628 Neighboring gene thioesterase superfamily member 4 pseudogene Neighboring gene piercer of microtubule wall 2 Neighboring gene dynein axonemal assembly factor 4 Neighboring gene pygopus family PHD finger 1 Neighboring gene protogenin

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • DYX1C1-CCPG1 readthrough (NMD candidate)
  • DYX1C1-CCPG1 readthrough (non-protein coding)

Clone Names

  • FLJ60574

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037923.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018926, AC022083, BC051725
    Related
    ENST00000565113.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    55355223..55498584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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