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ARHGAP19-SLIT1 ARHGAP19-SLIT1 readthrough (NMD candidate) [ Homo sapiens (human) ]

Gene ID: 100533184, updated on 12-Oct-2019

Summary

Official Symbol
ARHGAP19-SLIT1provided by HGNC
Official Full Name
ARHGAP19-SLIT1 readthrough (NMD candidate)provided by HGNC
Primary source
HGNC:HGNC:48348
See related
Ensembl:ENSG00000269891
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ARHGAP19
Summary
This locus represents naturally occurring read-through transcription between the neighboring Rho GTPase activating protein 19 (ARHGAP19) and slit homolog 1 (SLIT1) genes on chromosome 10. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Feb 2011]
Expression
Broad expression in testis (RPKM 11.0), lymph node (RPKM 5.6) and 23 other tissues See more

Genomic context

See ARHGAP19-SLIT1 in Genome Data Viewer
Location:
10q24.1
Exon count:
15
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (97153042..97292673, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (98912799..99052430, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene slit guidance ligand 1 Neighboring gene uncharacterized LOC105378444 Neighboring gene SLIT1 antisense RNA 1 Neighboring gene uncharacterized LOC112268065 Neighboring gene uncharacterized LOC105378447 Neighboring gene Rho GTPase activating protein 19 Neighboring gene ribosomal protein L12 pseudogene 27 Neighboring gene FRAT regulator of WNT signaling pathway 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • Rho GTPase-activating protein 19
  • Rho-type GTPase-activating protein 19

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037909.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA431797, AL359385, AY336750
    Related
    ENST00000479633.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    97153042..97292673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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