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SEC24B-AS1 SEC24B antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100533182, updated on 10-Oct-2023

Summary

Official Symbol
SEC24B-AS1provided by HGNC
Official Full Name
SEC24B antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44003
See related
Ensembl:ENSG00000247950 AllianceGenome:HGNC:44003
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
1/2-SBSRNA4
Summary
This lncRNA contains a single Alu element which, along with 1/2-sbsRNA3, appears to target the 3' UTR Alu element in MTAP. Downregulation of the RNA appears to up-regulate the target. [provided by RefSeq, Feb 2011]
Expression
Ubiquitous expression in thyroid (RPKM 1.0), ovary (RPKM 0.6) and 24 other tissues See more
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Genomic context

See SEC24B-AS1 in Genome Data Viewer
Location:
4q25
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (109429963..109433817, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (112732094..112735948, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (110351119..110354973, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:110223886-110224668 Neighboring gene COL25A1 divergent transcript Neighboring gene RBMX pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:110314172-110314672 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:110314673-110315173 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:110340209-110340746 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:110354865-110355724 Neighboring gene Sharpr-MPRA regulatory region 6018 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:110374133-110374713 Neighboring gene SEC24 homolog B, COPII coat complex component Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71781 Neighboring gene RNA, 7SL, cytoplasmic 55, pseudogene Neighboring gene microRNA 576

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • SEC24B antisense RNA 1 (non-protein coding)
  • lncRNA_BC009800

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_039978.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138782, BC009800
    Related
    ENST00000499359.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    109429963..109433817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    112732094..112735948 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)