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INO80B-WBP1 INO80B-WBP1 readthrough (NMD candidate) [ Homo sapiens (human) ]

Gene ID: 100532735, updated on 10-Dec-2019

Summary

Official Symbol
INO80B-WBP1provided by HGNC
Official Full Name
INO80B-WBP1 readthrough (NMD candidate)provided by HGNC
Primary source
HGNC:HGNC:49199
See related
Ensembl:ENSG00000274049
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally occurring read-through transcription between the neighboring INO80B (INO80 complex subunit B) and WBP1 (WW domain-binding protein 1) genes on chromosome 2. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Feb 2011]
Expression
Ubiquitous expression in thyroid (RPKM 31.5), prostate (RPKM 31.0) and 25 other tissues See more

Genomic context

See INO80B-WBP1 in Genome Data Viewer
Location:
2p13.1
Exon count:
8
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (74455023..74460891)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (74682150..74688018)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene chromosome 2 open reading frame 81 Neighboring gene high mobility group AT-hook 1 pseudogene 8 Neighboring gene WD repeat domain 54 Neighboring gene rhotekin Neighboring gene INO80 complex subunit B Neighboring gene WW domain binding protein 1 Neighboring gene mannosyl-oligosaccharide glucosidase Neighboring gene mitochondrial ribosomal protein L53

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037849.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005041, AK055333
    Related
    ENST00000452361.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    74455023..74460891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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