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col10a1a collagen, type X, alpha 1a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100529176, updated on 16-Jun-2026
Gene symbol
col10a1a
Gene description
collagen, type X, alpha 1a
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
all
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See col10a1a in Genome Data Viewer
Location:
chromosome: 22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2026_01 current Olatipes_Hd-rR_3.1 (GCF_053564925.1) 22 NC_136258.1 (22455203..22459349, complement)
103 previous assembly ASM223467v1 (GCF_002234675.1) 22 NC_019880.2 (8040396..8044542)

Chromosome 22 - NC_136258.1Genomic Context describing neighboring genes Neighboring gene FYN proto-oncogene, Src family tyrosine kinase a Neighboring gene myristoylated alanine-rich protein kinase C substrate b Neighboring gene uncharacterized LOC110017536 Neighboring gene uncharacterized LOC144989005 Neighboring gene four and a half LIM domains 5

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Lineage tracing of col10a1 cells identifies distinct progenitor populations for osteoblasts and joint cells in the regenerating fin of medaka (Oryzias latipes). Dasyani M, et al. Dev Biol, 2019 Nov 1. PMID 31325454
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data show that collagen type X alpha 1a (col10a1)-positive cells do not represent an exclusive source for osteoblasts but are progenitors of joint cells in the regenerating fin.
    Title: Lineage tracing of col10a1 cells identifies distinct progenitor populations for osteoblasts and joint cells in the regenerating fin of medaka (Oryzias latipes).
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
collagen, type X, alpha 1a
Names
Col10a1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001201509.1 → NP_001188438.1  collagen, type X, alpha 1a precursor

    See identical proteins and their annotated locations for NP_001188438.1

    Status: PROVISIONAL

    Source sequence(s)
    GU144299
    UniProtKB/TrEMBL
    A0ACM8QK09, D2XEB1, H2ME47
    Conserved Domains (2) summary
    smart00110
    Location:512 → 640
    C1Q; Complement component C1q domain
    pfam01391
    Location:394 → 453
    Collagen; Collagen triple helix repeat (20 copies)

RefSeqs of Annotated Genomes: GCF_053564925.1-RS_2026_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Olatipes_Hd-rR_3.1

Genomic

  1. NC_136258.1 Reference Olatipes_Hd-rR_3.1

    Range
    22455203..22459349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials