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acyp2 acylphosphatase 2, muscle type [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528261, updated on 20-Aug-2024

Summary

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Gene symbol
acyp2
Gene description
acylphosphatase 2, muscle type
See related
EnsemblRapid:ENSIPUG00020031909
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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See acyp2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 10 NC_030425.2 (25788106..25797746)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 10 NC_030425.1 (4577615..4587720, complement)

Chromosome 10 - NC_030425.2Genomic Context describing neighboring genes Neighboring gene sulfotransferase family, cytosolic, 6b, member 1 Neighboring gene forkhead box G1b Neighboring gene uncharacterized protein C2orf73 homolog Neighboring gene spectrin, beta, non-erythrocytic 1 Neighboring gene uncharacterized LOC108270929

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acylphosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acylphosphatase-2
NP_001187460.1
XP_047013865.1
XP_047013866.1
XP_047013867.1
XP_053538998.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200531.1 → NP_001187460.1  acylphosphatase-2 precursor

    See identical proteins and their annotated locations for NP_001187460.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588715
    UniProtKB/TrEMBL
    E3TED5
    Related
    ENSIPUP00020058409.1, ENSIPUT00020076794.1
    Conserved Domains (1) summary
    pfam00708
    Location:31 → 106
    Acylphosphatase; Acylphosphatase

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030425.2 Reference Coco_2.0 Primary Assembly

    Range
    25788106..25797746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047157910.2 → XP_047013866.1  acylphosphatase-2 isoform X2

    UniProtKB/TrEMBL
    A0A979F117

  2. XM_047157911.2 → XP_047013867.1  acylphosphatase-2 isoform X3

    UniProtKB/TrEMBL
    A0A979F1L1
    Related
    ENSIPUP00020058405.1, ENSIPUT00020076790.1

  3. XM_047157909.1 → XP_047013865.1  acylphosphatase-2 isoform X1

    UniProtKB/TrEMBL
    A0A979F1C0

  4. XM_053683023.1 → XP_053538998.1  acylphosphatase-2 isoform X4

    UniProtKB/TrEMBL
    A0A9F7TKU1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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