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GJA9-MYCBP GJA9-MYCBP readthrough [ Homo sapiens (human) ]

Gene ID: 100527950, updated on 17-Jun-2019

Summary

Gene symbol
GJA9-MYCBP
Gene description
GJA9-MYCBP readthrough
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Cx58; Cx59; GJA9; GJA10
Summary
This locus represents naturally occurring read-through transcription between the neighboring GJA9 (gap junction protein, alpha 9, 59kDa) and MYCBP (c-myc binding protein) genes on chromosome 1. Alternative splicing results in multiple transcript variants. These variants are either candidates for nonsense-mediated mRNA decay (NMD) and/or they lack a significant open reading frame, thus they are unlikely to produce protein products. [provided by RefSeq, Dec 2010]
Expression
Ubiquitous expression in testis (RPKM 7.3), colon (RPKM 5.3) and 25 other tissues See more

Genomic context

See GJA9-MYCBP in Genome Data Viewer
Location:
1p34.3
Exon count:
7
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (38862490..38881626, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (39328162..39347298, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1139 Neighboring gene Ras related GTP binding C Neighboring gene Sharpr-MPRA regulatory region 3933 Neighboring gene uncharacterized LOC105378663 Neighboring gene MYC binding protein Neighboring gene gap junction protein alpha 9 Neighboring gene rhomboid like 2 Neighboring gene uncharacterized LOC105378662 Neighboring gene RNA, U6 small nuclear 605, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Readthrough GJA9-MYCBP

Included genes: MYCBP, GJA9

Other Names

  • Connexin-58
  • Connexin-59
  • Gap junction alpha-10 protein
  • Gap junction alpha-9 protein

Clone Names

  • FLJ41056

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037633.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL139260, BC051675
  2. NR_037634.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate segment in the central region, compared to variant 1.
    Source sequence(s)
    AK123051, AL139260
  3. NR_037635.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AL139260, FY211295
  4. NR_037636.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two internal exons, compared to variant 1.
    Source sequence(s)
    AL139260, FY211253
  5. NR_037637.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks three internal exons and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AL139260, FY210901

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    38862490..38881626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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