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FPGT-TNNI3K FPGT-TNNI3K readthrough [ Homo sapiens (human) ]

Gene ID: 100526835, updated on 23-Nov-2021

Summary

Official Symbol
FPGT-TNNI3Kprovided by HGNC
Official Full Name
FPGT-TNNI3K readthroughprovided by HGNC
Primary source
HGNC:HGNC:42952
See related
Ensembl:ENSG00000259030
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CARK; TNNI3K
Summary
This locus represents naturally occurring read-through transcription from the neighboring fucose-1-phosphate guanylyltransferase (FPGT) and TNNI3 interacting kinase (TNNI3K) genes. Alternative splicing results in multiple transcript variants that are composed of in-frame exons from each individual gene. [provided by RefSeq, Dec 2010]
Expression
Broad expression in heart (RPKM 16.5), testis (RPKM 1.7) and 15 other tissues See more
Orthologs
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Genomic context

See FPGT-TNNI3K in Genome Data Viewer
Location:
1p31.1
Exon count:
28
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (74198242..74544428)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (74663926..75010112)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RNA, U4atac small nuclear 8, pseudogene Neighboring gene leucine rich repeats and IQ motif containing 3 Neighboring gene fucose-1-phosphate guanylyltransferase Neighboring gene TNNI3 interacting kinase Neighboring gene Sharpr-MPRA regulatory region 9784 Neighboring gene uncharacterized LOC105378805 Neighboring gene leucine rich repeat containing 53 Neighboring gene ERICH3 antisense RNA 1 Neighboring gene glutamate rich 3 Neighboring gene crystallin zeta

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.
GeneReviews: Not available
Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.
GeneReviews: Not available
Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.
GeneReviews: Not available
Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
GeneReviews: Not available
Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
GeneReviews: Not available

General gene information

Markers

Homology

Clone Names

  • MGC33828, DKFZp686C06106

General protein information

Preferred Names
FPGT-TNNI3K fusion protein
Names
Cardiac ankyrin repeat kinase
Cardiac troponin I-interacting kinase
Serine/threonine-protein kinase TNNI3K
TNNI3-interacting kinase
NP_001106279.3
NP_001186256.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001112808.3NP_001106279.3  FPGT-TNNI3K fusion protein isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AC093158, AC098692, AC105271, AC119672, BX470253
    Related
    ENSP00000450895.3, ENST00000557284.7
    Conserved Domains (4) summary
    PHA03095
    Location:221515
    PHA03095; ankyrin-like protein; Provisional
    cd14064
    Location:570823
    PKc_TNNI3K; Catalytic domain of the Dual-specificity protein kinase, TNNI3-interacting kinase
    sd00045
    Location:235265
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:172265
    Ank_2; Ankyrin repeats (3 copies)
  2. NM_001199327.2NP_001186256.3  FPGT-TNNI3K fusion protein isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding region, compare to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform a.
    Source sequence(s)
    AC093158, AC098692, AC105271, AC119672
    Related
    ENSP00000359936.3, ENST00000370899.7
    Conserved Domains (4) summary
    PHA03095
    Location:221515
    PHA03095; ankyrin-like protein; Provisional
    cd14064
    Location:570826
    PKc_TNNI3K; Catalytic domain of the Dual-specificity protein kinase, TNNI3-interacting kinase
    sd00045
    Location:235265
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:172265
    Ank_2; Ankyrin repeats (3 copies)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    74198242..74544428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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