U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase [ Sus scrofa (pig) ]

Gene ID: 100524544, updated on 1-Mar-2025
Official Symbol
ABL1provided by VGNC
Official Full Name
ABL proto-oncogene 1, non-receptor tyrosine kinaseprovided by VGNC
Primary source
VGNC:VGNC:84984
See related
Ensembl:ENSSSCG00000005706 RGD:14018415
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 42.7), heart (RPKM 18.9) and 8 other tissues See more
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See ABL1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (270761641..270906708)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (304684385..304829654)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene PR/SET domain 12 Neighboring gene exosome component 2 Neighboring gene pyroglutamylated RFamide peptide Neighboring gene fibrinogen C domain containing 1

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables non-membrane spanning protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
tyrosine-protein kinase ABL1
Names
c-abl oncogene 1, non-receptor tyrosine kinase

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    270761641..270906708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005660524.3 → XP_005660581.1  tyrosine-protein kinase ABL1 isoform X1

    See identical proteins and their annotated locations for XP_005660581.1

    UniProtKB/TrEMBL
    A0A287BB27, A0A8D1HDM8, A0A8D1P734
    Conserved Domains (5) summary
    smart00808
    Location:1022 → 1146
    FABD; F-actin binding domain (FABD)
    cd09935
    Location:142 → 235
    SH2_ABL; Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins
    cd11850
    Location:84 → 137
    SH3_Abl; Src homology 3 domain of the Protein Tyrosine Kinase, Abelson kinase
    cd05052
    Location:254 → 516
    PTKc_Abl; Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase
    pfam07714
    Location:261 → 512
    Pkinase_Tyr; Protein tyrosine kinase

  2. XM_005660525.3 → XP_005660582.1  tyrosine-protein kinase ABL1 isoform X1

    See identical proteins and their annotated locations for XP_005660582.1

    UniProtKB/TrEMBL
    A0A287BB27, A0A8D1HDM8, A0A8D1P734
    Related
    ENSSSCP00000053721.1, ENSSSCT00000054304.2
    Conserved Domains (5) summary
    smart00808
    Location:1022 → 1146
    FABD; F-actin binding domain (FABD)
    cd09935
    Location:142 → 235
    SH2_ABL; Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins
    cd11850
    Location:84 → 137
    SH3_Abl; Src homology 3 domain of the Protein Tyrosine Kinase, Abelson kinase
    cd05052
    Location:254 → 516
    PTKc_Abl; Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase
    pfam07714
    Location:261 → 512
    Pkinase_Tyr; Protein tyrosine kinase

  3. XM_005660526.3 → XP_005660583.1  tyrosine-protein kinase ABL1 isoform X2

    UniProtKB/TrEMBL
    A0A8D1H808, A0A8D1P5P8, F1S0X4
    Related
    ENSSSCP00000006113.3, ENSSSCT00000006275.5
    Conserved Domains (5) summary
    smart00808
    Location:1003 → 1127
    FABD; F-actin binding domain (FABD)
    cd09935
    Location:123 → 216
    SH2_ABL; Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins
    cd11850
    Location:65 → 118
    SH3_Abl; Src homology 3 domain of the Protein Tyrosine Kinase, Abelson kinase
    cd05052
    Location:235 → 497
    PTKc_Abl; Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase
    pfam07714
    Location:242 → 493
    Pkinase_Tyr; Protein tyrosine kinase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.