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GOLM2 golgi membrane protein 2 [ Sus scrofa (pig) ]

Gene ID: 100523528, updated on 8-Mar-2024

Summary

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Official Symbol
GOLM2provided by VGNC
Official Full Name
golgi membrane protein 2provided by VGNC
Primary source
VGNC:VGNC:96582
See related
Ensembl:ENSSSCG00000023996
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
CASC4
Expression
Ubiquitous expression in kidney (RPKM 13.3), ovary (RPKM 12.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (127132387..127238488, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (141951608..141994394)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit J Neighboring gene CTD small phosphatase like 2 Neighboring gene FERM domain containing 5 Neighboring gene 60S ribosomal protein L28 pseudogene Neighboring gene WD repeat domain 76

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein CASC4
Names
cancer susceptibility 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    127132387..127238488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013993061.2 → XP_013848515.2  protein CASC4 isoform X2

    UniProtKB/TrEMBL
    A0A4X1VCY8, A0A8D0IW82, I3LHM7
    Related
    ENSSSCP00000023574.2, ENSSSCT00000025826.4
    Conserved Domains (1) summary
    cl25732
    Location:42 → 204
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_021096541.1 → XP_020952200.1  protein CASC4 isoform X1

    UniProtKB/TrEMBL
    A0A4X1V8K3, A0A5G2R207, A0A8D0IW82
    Related
    ENSSSCP00000071144.1, ENSSSCT00000088308.1
    Conserved Domains (1) summary
    cl25732
    Location:42 → 204
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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