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TM4SF1 transmembrane 4 L six family member 1 [ Sus scrofa (pig) ]

Gene ID: 100522035, updated on 2-Oct-2018

Summary

Gene symbol
TM4SF1
Gene description
transmembrane 4 L six family member 1
See related
Ensembl:ENSSSCG00000033018
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 40.0), subcutaneous adipose (RPKM 38.6) and 8 other tissues See more
Orthologs

Genomic context

See TM4SF1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (89591105..89600060, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (97594590..97603471, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene ceruloplasmin (ferroxidase)-like Neighboring gene transmembrane 4 L six family member 18 Neighboring gene transmembrane 4 L six family member 4 Neighboring gene 40S ribosomal protein S4, X isoform-like Neighboring gene WW domain containing transcription regulator 1

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General protein information

Preferred Names
transmembrane 4 L6 family member 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    89591105..89600060 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003132478.4XP_003132526.1  transmembrane 4 L6 family member 1

    UniProtKB/TrEMBL
    A0A287BGK0
    Related
    ENSSSCP00000055178.1, ENSSSCT00000059726.1
    Conserved Domains (1) summary
    pfam05805
    Location:1194
    L6_membrane; L6 membrane protein
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