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LOC100519314 natural killer cells antigen CD94 [ Sus scrofa (pig) ]

Gene ID: 100519314, updated on 16-Nov-2023

Summary

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Gene symbol
LOC100519314
Gene description
natural killer cells antigen CD94
See related
Ensembl:ENSSSCG00000026217
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in spleen (RPKM 16.2), lung (RPKM 3.6) and 2 other tissues See more
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (61724744..61736667, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (64653296..64665221)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene killer cell lectin like receptor K1 Neighboring gene killer cell lectin like receptor D1 Neighboring gene GABA type A receptor associated protein like 1 Neighboring gene transmembrane protein 52B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of natural killer cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stimulatory C-type lectin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
natural killer cells antigen CD94
Names
killer cell lectin-like receptor subfamily D, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    61724744..61736667 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013988391.2 → XP_013843845.2  natural killer cells antigen CD94 isoform X3

    UniProtKB/TrEMBL
    A0A287AGW7, A0A4X1V4K6
    Conserved Domains (1) summary
    cd03593
    Location:85 → 197
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_005655679.3 → XP_005655736.2  natural killer cells antigen CD94 isoform X1

    UniProtKB/TrEMBL
    A0A4X1V4K6, I3L6H9
    Related
    ENSSSCP00000019630.2, ENSSSCT00000032316.2
    Conserved Domains (2) summary
    cd03593
    Location:123 → 235
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    pfam15706
    Location:59 → 130
    TMEM132D_C; Mature oligodendrocyte transmembrane protein, TMEM132D, C-term

  3. XM_013988390.2 → XP_013843844.1  natural killer cells antigen CD94 isoform X2

    Conserved Domains (2) summary
    cd03593
    Location:87 → 199
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    pfam08391
    Location:35 → 134
    Ly49; Ly49-like protein, N-terminal region

RNA

  1. XR_002344109.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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