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TMED6 transmembrane p24 trafficking protein 6 [ Sus scrofa (pig) ]

Gene ID: 100517589, updated on 8-Mar-2024

Summary

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Official Symbol
TMED6provided by VGNC
Official Full Name
transmembrane p24 trafficking protein 6provided by VGNC
Primary source
VGNC:VGNC:110226
See related
Ensembl:ENSSSCG00000002761
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in kidney (RPKM 3.8), mixtures (RPKM 0.9) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (17633653..17641915)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (16580399..16588628)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene cytochrome b5 type B Neighboring gene ER membrane protein complex subunit 3 pseudogene Neighboring gene telomeric repeat binding factor 2 Neighboring gene nucleolar pre-rRNA processing protein NIP7 Neighboring gene component of oligomeric golgi complex 8 Neighboring gene peptide deformylase, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane emp24 domain-containing protein 6
Names
transmembrane emp24 protein transport domain containing 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    17633653..17641915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003126907.4 → XP_003126955.1  transmembrane emp24 domain-containing protein 6

    UniProtKB/TrEMBL
    A0A4X1SF79, A0A8D0SFL7, F1S389
    Related
    ENSSSCP00000002979.2, ENSSSCT00000003058.5
    Conserved Domains (1) summary
    pfam01105
    Location:43 → 228
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD
Nucleotide Protein
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