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TWIST1 twist family bHLH transcription factor 1 [ Sus scrofa (pig) ]

Gene ID: 100516456, updated on 8-Mar-2024

Summary

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Gene symbol
TWIST1
Gene description
twist family bHLH transcription factor 1
See related
Ensembl:ENSSSCG00000058909
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in subcutaneous adipose (RPKM 16.4), ovary (RPKM 7.3) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (88286911..88290131, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (97326044..97329330, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene histone deacetylase 9 Neighboring gene uncharacterized LOC110262241 Neighboring gene uncharacterized LOC110262240 Neighboring gene Fer3 like bHLH transcription factor Neighboring gene uncharacterized LOC102161480 Neighboring gene RNA polymerase I subunit F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
twist-related protein 1
Names
twist basic helix-loop-helix transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    88286911..88290131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003130192.5 → XP_003130240.2  twist-related protein 1

    UniProtKB/TrEMBL
    A0A4X1TEI0, A0A8W4FJQ2
    Related
    ENSSSCP00000079128.1, ENSSSCT00000103894.1
    Conserved Domains (1) summary
    pfam00010
    Location:109 → 159
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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