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SEMA6D semaphorin 6D [ Sus scrofa (pig) ]

Gene ID: 100511850, updated on 8-Mar-2024

Summary

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Official Symbol
SEMA6Dprovided by VGNC
Official Full Name
semaphorin 6Dprovided by VGNC
Primary source
VGNC:VGNC:92711
See related
Ensembl:ENSSSCG00000004663
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 4.5), lung (RPKM 2.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
25
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (123987528..124586062, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (138042345..138421863, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102162952 Neighboring gene cortexin 2 Neighboring gene myelin expression factor 2 Neighboring gene solute carrier family 24 member 5 Neighboring gene rRNA 2'-O-methyltransferase fibrillarin pseudogene Neighboring gene gem-associated protein 2-like Neighboring gene putative elongation factor 1-alpha-like 3 Neighboring gene 60S ribosomal protein L29 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-6D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    123987528..124586062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021096114.1 → XP_020951773.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A8D1W921, A0A8D1Z4C3, F1SN61
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl26464
    Location:922 → 1069
    Atrophin-1; Atrophin-1 family

  2. XM_021096125.1 → XP_020951784.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A8D1W921, A0A8D1Z4C3, F1SN61
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl26464
    Location:922 → 1069
    Atrophin-1; Atrophin-1 family

  3. XM_021096215.1 → XP_020951874.1  semaphorin-6D isoform X12

    UniProtKB/TrEMBL
    A0A4X1SFM6, A0A8D0M6Z5
    Related
    ENSSSCP00000033109.3, ENSSSCT00000065161.3
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:834 → 981
    Atrophin-1; Atrophin-1 family

  4. XM_021096179.1 → XP_020951838.1  semaphorin-6D isoform X7

    UniProtKB/TrEMBL
    A0A4X1SGM2, A0A8D1S2L6
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:890 → 1037
    Atrophin-1; Atrophin-1 family

  5. XM_021096148.1 → XP_020951807.1  semaphorin-6D isoform X3

    UniProtKB/TrEMBL
    A0A4X1SG53, A0A8D0M666, A0A8D1ZAP6
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:909 → 1056
    Atrophin-1; Atrophin-1 family

  6. XM_021096203.1 → XP_020951862.1  semaphorin-6D isoform X10

    UniProtKB/TrEMBL
    A0A287BBB2, A0A4X1SFU2, A0A8D0VKI7, A0A8D1Z929
    Related
    ENSSSCP00000053824.1, ENSSSCT00000045755.2
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:853 → 1000
    Atrophin-1; Atrophin-1 family

  7. XM_005654459.3 → XP_005654516.1  semaphorin-6D isoform X12

    UniProtKB/TrEMBL
    A0A4X1SFM6, A0A8D0M6Z5
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:834 → 981
    Atrophin-1; Atrophin-1 family

  8. XM_005654454.3 → XP_005654511.1  semaphorin-6D isoform X3

    UniProtKB/TrEMBL
    A0A4X1SG53, A0A8D0M666, A0A8D1ZAP6
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:909 → 1056
    Atrophin-1; Atrophin-1 family

  9. XM_005654452.3 → XP_005654509.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A8D1W921, A0A8D1Z4C3, F1SN61
    Related
    ENSSSCP00000005023.4, ENSSSCT00000005149.5
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl26464
    Location:922 → 1069
    Atrophin-1; Atrophin-1 family

  10. XM_021096103.1 → XP_020951762.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A8D1W921, A0A8D1Z4C3, F1SN61
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl26464
    Location:922 → 1069
    Atrophin-1; Atrophin-1 family

  11. XM_021096209.1 → XP_020951868.1  semaphorin-6D isoform X12

    UniProtKB/TrEMBL
    A0A4X1SFM6, A0A8D0M6Z5
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:834 → 981
    Atrophin-1; Atrophin-1 family

  12. XM_021096174.1 → XP_020951833.1  semaphorin-6D isoform X7

    UniProtKB/TrEMBL
    A0A4X1SGM2, A0A8D1S2L6
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:890 → 1037
    Atrophin-1; Atrophin-1 family

  13. XM_021096197.1 → XP_020951856.1  semaphorin-6D isoform X10

    UniProtKB/TrEMBL
    A0A287BBB2, A0A4X1SFU2, A0A8D0VKI7, A0A8D1Z929
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:853 → 1000
    Atrophin-1; Atrophin-1 family

  14. XM_021096134.1 → XP_020951793.1  semaphorin-6D isoform X3

    UniProtKB/TrEMBL
    A0A4X1SG53, A0A8D0M666, A0A8D1ZAP6
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:909 → 1056
    Atrophin-1; Atrophin-1 family

  15. XM_021096204.1 → XP_020951863.1  semaphorin-6D isoform X11

    UniProtKB/TrEMBL
    A0A4X1SFM6, A0A8D0M6Z5
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl26464
    Location:847 → 994
    Atrophin-1; Atrophin-1 family

  16. XM_021096166.1 → XP_020951825.1  semaphorin-6D isoform X5

    UniProtKB/TrEMBL
    A0A8D1C016, A0A8D1HR32
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl26464
    Location:903 → 1050
    Atrophin-1; Atrophin-1 family

  17. XM_021096192.1 → XP_020951851.1  semaphorin-6D isoform X9

    UniProtKB/TrEMBL
    A0A4X1SFU2, A0A8D0VKI7
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl26464
    Location:866 → 1013
    Atrophin-1; Atrophin-1 family

  18. XM_021096132.1 → XP_020951791.1  semaphorin-6D isoform X2

    UniProtKB/TrEMBL
    A0A8D1W921
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl26464
    Location:918 → 1065
    Atrophin-1; Atrophin-1 family

  19. XM_013985533.2 → XP_013840987.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A8D1W921, A0A8D1Z4C3, F1SN61
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl26464
    Location:922 → 1069
    Atrophin-1; Atrophin-1 family

  20. XM_021096187.1 → XP_020951846.1  semaphorin-6D isoform X8

    UniProtKB/TrEMBL
    A0A286ZU71, A0A4X1SGM2, A0A8D1ADY0, A0A8D1S2L6
    Related
    ENSSSCP00000035132.1, ENSSSCT00000058132.2
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:886 → 1033
    Atrophin-1; Atrophin-1 family

  21. XM_021096160.1 → XP_020951819.1  semaphorin-6D isoform X4

    UniProtKB/TrEMBL
    A0A287BLQ6, A0A4X1SG43, A0A8D0M603, A0A8D1Z4S2
    Related
    ENSSSCP00000057550.1, ENSSSCT00000053165.2
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:905 → 1052
    Atrophin-1; Atrophin-1 family

  22. XM_021096151.1 → XP_020951810.1  semaphorin-6D isoform X4

    UniProtKB/TrEMBL
    A0A287BLQ6, A0A4X1SG43, A0A8D0M603, A0A8D1Z4S2
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl26464
    Location:905 → 1052
    Atrophin-1; Atrophin-1 family

  23. XM_021096168.1 → XP_020951827.1  semaphorin-6D isoform X6

    UniProtKB/TrEMBL
    A0A8D1C016, A0A8D1HR32, A0A8D1Z946
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl26464
    Location:899 → 1046
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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