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LINC02082 long intergenic non-protein coding RNA 2082 [ Homo sapiens (human) ]

Gene ID: 100507661, updated on 4-Dec-2023

Summary

Official Symbol
LINC02082provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2082provided by HGNC
Primary source
HGNC:HGNC:52931
See related
Ensembl:ENSG00000242268 AllianceGenome:HGNC:52931
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02082 in Genome Data Viewer
Location:
3q26.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (168901945..168921996)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (171685869..171705921)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (168619733..168639784)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene EGF like and EMI domain containing 1, pseudogene Neighboring gene ribosomal protein SA pseudogene 33 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:168525100-168525695 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:168529953-168530542 Neighboring gene ribosomal protein L21 pseudogene 43 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:168647847-168648347 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:168720282-168721053 Neighboring gene uncharacterized LOC107986051 Neighboring gene long intergenic non-protein coding RNA 1997

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109989.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092954, BX118401
    Related
    ENST00000484765.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    168901945..168921996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    171685869..171705921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)