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LINC01606 long intergenic non-protein coding RNA 1606 [ Homo sapiens (human) ]

Gene ID: 100507651, updated on 10-Oct-2023

Summary

Official Symbol
LINC01606provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1606provided by HGNC
Primary source
HGNC:HGNC:51656
See related
Ensembl:ENSG00000253301 AllianceGenome:HGNC:51656
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 8.0) See more
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Genomic context

See LINC01606 in Genome Data Viewer
Location:
8q12.1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (57218276..57232954)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (57639823..57654503)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (58130835..58145513)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene 3'(2'), 5'-bisphosphate nucleotidase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19212 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:57934309-57935282 Neighboring gene NANOG hESC enhancer GRCh37_chr8:58020294-58020880 Neighboring gene RNA, 5S ribosomal pseudogene 266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:58118103-58118604 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:58121391-58122590 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:58122972-58123472 Neighboring gene MPRA-validated peak7032 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:58172381-58172962 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:58173547-58174128 Neighboring gene uncharacterized LOC286177 Neighboring gene long intergenic non-protein coding RNA 588

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038235.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025674
    Related
    ENST00000519160.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    57218276..57232954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187566.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    56690..71368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    57639823..57654503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)