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LINC02397 long intergenic non-protein coding RNA 2397 [ Homo sapiens (human) ]

Gene ID: 100507616, updated on 13-May-2022

Summary

Official Symbol
LINC02397provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2397provided by HGNC
Primary source
HGNC:HGNC:53323
See related
AllianceGenome:HGNC:53323
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 3.8), spleen (RPKM 2.0) and 4 other tissues See more
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Genomic context

See LINC02397 in Genome Data Viewer
Location:
12q22
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (92466679..92483947)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (92444153..92461422)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (92860455..92877723)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chr12.2881 Neighboring gene CLLU1 antisense RNA 1 Neighboring gene chronic lymphocytic leukemia up-regulated 1 Neighboring gene uncharacterized LOC105369904 Neighboring gene MTCH2 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144532.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC063949, AL713197, AW512352, BC036936

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    92466679..92483947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    92444153..92461422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)