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LINC00837 long intergenic non-protein coding RNA 837 [ Homo sapiens (human) ]

Gene ID: 100507605, updated on 23-Nov-2021

Summary

Official Symbol
LINC00837provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 837provided by HGNC
Primary source
HGNC:HGNC:27436
See related
Ensembl:ENSG00000235824
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 11.8) See more
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Genomic context

See LINC00837 in Genome Data Viewer
Location:
10p12.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (28789311..28796050, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (29078240..29084979, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984170 Neighboring gene long intergenic non-protein coding RNA 1517 Neighboring gene RNA, U6 small nuclear 270, pseudogene Neighboring gene chromosome 10 open reading frame 126 Neighboring gene heart enhancer 23 Neighboring gene RNA, 5S ribosomal pseudogene 308

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038374.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL355376, DB072413, DB091920
  2. NR_038375.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AL355376, BC028422, DB072413
    Related
    ENST00000443246.2
  3. NR_038376.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in the 5' region and lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AL355376, DB072413, DB099527

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    28789311..28796050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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