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TRIM52-AS1 TRIM52 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

Gene ID: 100507602, updated on 25-Dec-2022

Summary

Official Symbol
TRIM52-AS1provided by HGNC
Official Full Name
TRIM52 antisense RNA 1 (head to head)provided by HGNC
Primary source
HGNC:HGNC:49006
See related
Ensembl:ENSG00000248275 MIM:619266; AllianceGenome:HGNC:49006
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in fat (RPKM 3.9), thyroid (RPKM 3.5) and 25 other tissues See more
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Genomic context

See TRIM52-AS1 in Genome Data Viewer
Location:
5q35.3
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (181261212..181272307)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (181821165..181832260)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (180688213..180699308)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene receptor for activated C kinase 1 Neighboring gene uncharacterized LOC101928649 Neighboring gene small nucleolar RNA, C/D box 95 Neighboring gene tripartite motif containing 52 Neighboring gene RNA, U6 small nuclear 705, pseudogene Neighboring gene uncharacterized LOC100132062 Neighboring gene capicua transcriptional repressor pseudogene 15

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_102759.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC008443, BQ778070, CK905273
    Related
    ENST00000657194.2
  2. NR_102760.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal segment, compared to variant 1.
    Source sequence(s)
    AC008443, BM014221, BQ778070
    Related
    ENST00000509252.2
  3. NR_102761.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an internal segment, compared to variant 1.
    Source sequence(s)
    AC008443, BQ778070, HY116666
    Related
    ENST00000433265.5
  4. NR_102762.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has an alternate and shorter 3' sequence, compared to variant 1.
    Source sequence(s)
    BC016291, BQ778070, HY123799
    Related
    ENST00000507434.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    181261212..181272307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    181821165..181832260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)