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LINC01504 long intergenic non-protein coding RNA 1504 [ Homo sapiens (human) ]

Gene ID: 100507540, updated on 25-Jan-2022

Summary

Official Symbol
LINC01504provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1504provided by HGNC
Primary source
HGNC:HGNC:51185
See related
Ensembl:ENSG00000225434 AllianceGenome:HGNC:51185
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01504 in Genome Data Viewer
Location:
9q21.13
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (72305436..72343210)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (74920352..74958126)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene NME/NM23 nucleoside diphosphate kinase 2 pseudogene Neighboring gene RNA, 5S ribosomal pseudogene 285 Neighboring gene zinc finger AN1-type containing 5 Neighboring gene ribosomal protein S12 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110952.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This transcript (1) represents the longer transcript.
    Source sequence(s)
    AK095210, AL135924
    Related
    ENST00000436054.1
  2. NR_110953.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' structure and is shorter compared to variant 1.
    Source sequence(s)
    AA436218, AL135924, N93488
    Related
    ENST00000451152.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    72305436..72343210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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