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SDCBP2-AS1 SDCBP2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100507495, updated on 25-Jan-2022

Summary

Official Symbol
SDCBP2-AS1provided by HGNC
Official Full Name
SDCBP2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44314
See related
Ensembl:ENSG00000234684 AllianceGenome:HGNC:44314
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in adrenal (RPKM 1.8), thyroid (RPKM 1.5) and 25 other tissues See more
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Genomic context

See SDCBP2-AS1 in Genome Data Viewer
Location:
20p13
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (1325343..1378735)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (1305987..1359379)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene RAD21 cohesin complex component like 1 Neighboring gene syntaphilin Neighboring gene FKBP1A-SDCBP2 readthrough (NMD candidate) Neighboring gene syndecan binding protein 2 Neighboring gene Sharpr-MPRA regulatory region 67 Neighboring gene FKBP prolyl isomerase 1A Neighboring gene uncharacterized LOC105372497 Neighboring gene microRNA 6869

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • SDCBP2 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040047.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL109658, AL136531, BC034773, DA094549, DA274215, DB454162
    Related
    ENST00000609285.6
  2. NR_040048.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site and includes an alternate exon, compared to variant 1.
    Source sequence(s)
    AK055993, AL109658, AL136531, BC034773, DB454162
    Related
    ENST00000446423.2
  3. NR_040049.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AL109658, BC034773, DB454162
    Related
    ENST00000609470.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    1325343..1378735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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