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LINC02539 long intergenic non-protein coding RNA 2539 [ Homo sapiens (human) ]

Gene ID: 100507406, updated on 13-May-2022

Summary

Official Symbol
LINC02539provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2539provided by HGNC
Primary source
HGNC:HGNC:53572
See related
Ensembl:ENSG00000234956 AllianceGenome:HGNC:53572
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.3) See more
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Genomic context

See LINC02539 in Genome Data Viewer
Location:
6q23.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (137730170..137739037, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (138918593..138927460, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (138051307..138060174, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901411 Neighboring gene protein tyrosine phosphatase non-receptor type 11 pseudogene Neighboring gene wound and keratinocyte migration associated lncRNA 2 Neighboring gene TNF alpha induced protein 3 Neighboring gene long intergenic non-protein coding RNA 2528 Neighboring gene long intergenic non-protein coding RNA 2865

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121618.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL357060, BQ011120, N41668
    Related
    ENST00000411615.5
  2. NR_121619.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL357060, BF970945, BQ011120
    Related
    ENST00000668179.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    137730170..137739037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    138918593..138927460 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)