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SENCR smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA [ Homo sapiens (human) ]

Gene ID: 100507392, updated on 12-Jun-2022

Summary

Official Symbol
SENCRprovided by HGNC
Official Full Name
smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNAprovided by HGNC
Primary source
HGNC:HGNC:44177
See related
Ensembl:ENSG00000254703 MIM:615815; AllianceGenome:HGNC:44177
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lncRNA9; FLI1-AS1
Expression
Broad expression in spleen (RPKM 2.6), placenta (RPKM 0.7) and 16 other tissues See more
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Genomic context

See SENCR in Genome Data Viewer
Location:
11q24.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (128691672..128696023, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (128724900..128729224, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (128561567..128565918, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369568 Neighboring gene uncharacterized LOC101929538 Neighboring gene Fli-1 proto-oncogene, ETS transcription factor Neighboring gene uncharacterized LOC107984409 Neighboring gene potassium inwardly rectifying channel subfamily J member 1 Neighboring gene KCNJ5 antisense RNA 1 Neighboring gene potassium inwardly rectifying channel subfamily J member 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • FLI1 antisense RNA 1 (non-protein coding)
  • smooth muscle and endothelial cell enriched migration/differentiation-associated long non-coding RNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038908.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI860159, AP001122, BC039676
    Related
    ENST00000526269.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    128691672..128696023 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    128724900..128729224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)