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ADGRL1-AS1 ADGRL1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100507373, updated on 17-Sep-2024

Summary

Official Symbol
ADGRL1-AS1provided by HGNC
Official Full Name
ADGRL1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55309
See related
Ensembl:ENSG00000267169 AllianceGenome:HGNC:55309
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in brain (RPKM 2.9), spleen (RPKM 1.6) and 24 other tissues See more
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Genomic context

See ADGRL1-AS1 in Genome Data Viewer
Location:
19p13.12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (14137152..14171264)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (14263764..14297917)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (14247964..14282076)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:14223743-14224430 Neighboring gene protein kinase cAMP-activated catalytic subunit alpha Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10233 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10234 Neighboring gene uncharacterized LOC124904642 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14155 Neighboring gene small integral membrane protein 46 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10235 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14156 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:14247764-14248390 Neighboring gene Sharpr-MPRA regulatory region 12148 Neighboring gene anti-silencing function 1B histone chaperone Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:14258690-14259433 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14278263-14278762 Neighboring gene adhesion G protein-coupled receptor L1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10237 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10238 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:14320437-14320936 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:14328052-14328362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14332061-14332584 Neighboring gene RNA, 7SL, cytoplasmic 231, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10240 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10241 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:14360564-14361081 Neighboring gene MPRA-validated peak3380 silencer Neighboring gene MPRA-validated peak3381 silencer Neighboring gene Sharpr-MPRA regulatory region 1520 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14408885-14409384 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:14421820-14422074 Neighboring gene long intergenic non-protein coding RNA 1841 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14429209-14429710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14429711-14430210 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:14444577-14445252 Neighboring gene MPRA-validated peak3382 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14449292-14449792 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:14449793-14450293 Neighboring gene long intergenic non-protein coding RNA 1842

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • CTB-55O6.12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045214.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022098, BX537706
    Related
    ENST00000588387.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    14137152..14171264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160022.1 Reference GRCh38.p14 PATCHES

    Range
    349311..383423
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    14263764..14297917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)