U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SNHG16 small nucleolar RNA host gene 16 [ Homo sapiens (human) ]

Gene ID: 100507246, updated on 24-Jul-2022

Summary

Official Symbol
SNHG16provided by HGNC
Official Full Name
small nucleolar RNA host gene 16provided by HGNC
Primary source
HGNC:HGNC:44352
See related
Ensembl:ENSG00000163597 AllianceGenome:HGNC:44352
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ncRAN; Nbla10727; Nbla12061
Expression
Ubiquitous expression in ovary (RPKM 13.9), skin (RPKM 12.2) and 25 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SNHG16 in Genome Data Viewer
Location:
17q25.1
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (76557764..76565348)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (77454512..77462094)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (74553846..74561430)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene rhomboid 5 homolog 2 Neighboring gene cytoglobin Neighboring gene photoreceptor disc component Neighboring gene testis-specific serine/proline-rich protein Neighboring gene ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 Neighboring gene small nucleolar RNA, C/D box 1C Neighboring gene small nucleolar RNA, C/D box 1B Neighboring gene small nucleolar RNA, C/D box 1A Neighboring gene ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • non-coding RNA expressed in aggressive neuroblastoma
  • small nucleolar RNA host gene 16 (non-protein coding)

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038108.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC015802
    Related
    ENST00000653677.2
  2. NR_038109.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses a different splice site in the 3' end, compared to variant 1.
    Source sequence(s)
    AC015802
    Related
    ENST00000670737.3
  3. NR_038110.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate segment in the 5' end, compared to variant 1.
    Source sequence(s)
    AC015802
    Related
    ENST00000493536.7
  4. NR_038111.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate segment in the 5' end and uses a different splice site in the 3' end, compared to variant 1.
    Source sequence(s)
    AC015802
    Related
    ENST00000661348.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    76557764..76565348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    77454512..77462094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)