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LINC02740 long intergenic non-protein coding RNA 2740 [ Homo sapiens (human) ]

Gene ID: 100507205, updated on 10-Dec-2024

Summary

Official Symbol
LINC02740provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2740provided by HGNC
Primary source
HGNC:HGNC:54257
See related
AllianceGenome:HGNC:54257
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02740 in Genome Data Viewer
Location:
11p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (42187743..42253690, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (42334512..42400445, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (42209293..42275240, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376639 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:41890849-41891036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:41969181-41969681 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:41999882-42001081 Neighboring gene long intergenic non-protein coding RNA 2745 Neighboring gene uncharacterized LOC105376641 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:42243924-42244178 Neighboring gene uncharacterized LOC105376642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:42548059-42548559 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:42617353-42617887 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:42898020-42898550 Neighboring gene mannosidase alpha class 1B member 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038309.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090458

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    42187743..42253690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    42334512..42400445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)