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LINC01792 long intergenic non-protein coding RNA 1792 [ Homo sapiens (human) ]

Gene ID: 100507140, updated on 10-Oct-2023

Summary

Official Symbol
LINC01792provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1792provided by HGNC
Primary source
HGNC:HGNC:52582
See related
AllianceGenome:HGNC:52582
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01792 in Genome Data Viewer
Location:
2q33.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (200712305..200735177, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (201195683..201218555, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (201577028..201599900, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene shugoshin 2 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:201473343-201474542 Neighboring gene aldehyde oxidase 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:201513174-201514373 Neighboring gene AOX3P-AOX2P readthrough, transcribed pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16961 Neighboring gene aldehyde oxidase 3, pseudogene Neighboring gene aldehyde oxidase 2, pseudogene Neighboring gene AOX3P-AOX2P intron CAGE-defined mid-level expression enhancer Neighboring gene RNA, U1 small nuclear 133, pseudogene Neighboring gene BZW1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16962 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12227 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:201676955-201677470 Neighboring gene basic leucine zipper and W2 domains 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study of intelligence: additive effects of novel brain expressed genes.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037886.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007163

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    200712305..200735177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    201195683..201218555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)