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LINC01798 long intergenic non-protein coding RNA 1798 [ Homo sapiens (human) ]

Gene ID: 100507073, updated on 17-Jun-2019

Summary

Official Symbol
LINC01798provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1798provided by HGNC
Primary source
HGNC:HGNC:52588
See related
Ensembl:ENSG00000232046
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in salivary gland (RPKM 1.7), testis (RPKM 1.1) and 12 other tissues See more

Genomic context

See LINC01798 in Genome Data Viewer
Location:
2p14
Exon count:
6
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (66574030..66695588)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (66918545..66922889)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Meis homeobox 1 Neighboring gene HHc2:066659 enhancer in MEIS1 Neighboring gene HHc2:067135 enhancer in MEIS1 Neighboring gene HHc2:067347 enhancer downstream of MEIS1 Neighboring gene long intergenic non-protein coding RNA 1797 Neighboring gene DNA methyltransferase 3A pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110156.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007392, CN360491, DA616181
    Related
    ENST00000433396.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    66574030..66695588
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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