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PTPRG-AS1 PTPRG antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100506994, updated on 17-Sep-2024

Summary

Official Symbol
PTPRG-AS1provided by HGNC
Official Full Name
PTPRG antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44638
See related
Ensembl:ENSG00000241472 AllianceGenome:HGNC:44638
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in adrenal (RPKM 4.9), kidney (RPKM 4.8) and 23 other tissues See more
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Genomic context

See PTPRG-AS1 in Genome Data Viewer
Location:
3p14.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (62261819..62318947, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (62305296..62362457, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (62247494..62304622, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type G Neighboring gene NANOG hESC enhancer GRCh37_chr3:62155504-62156044 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_70816 Neighboring gene Sharpr-MPRA regulatory region 11400 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62175493-62176339 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:62176867-62177367 Neighboring gene uncharacterized LOC124909389 Neighboring gene inhibitor of DNA binding 2B (pseudogene) Neighboring gene Sharpr-MPRA regulatory region 9750 Neighboring gene VISTA enhancer hs434 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62353809-62354715 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62354716-62355621 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62357949-62358508 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62358509-62359066 Neighboring gene centrosomal protein 15 Neighboring gene FEZ family zinc finger 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038281.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AK307209, AK308660, BC041886, R37661
    Related
    ENST00000652980.1
  2. NR_038282.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon and includes an alternate exon, compared to variant 1.
    Source sequence(s)
    AC092502, AK308660, BC041886, R37661
    Related
    ENST00000668824.1
  3. NR_038283.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two internal exons and includes an alternate exon, compared to variant 1.
    Source sequence(s)
    AK094634, AK308660, R37661
    Related
    ENST00000462497.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    62261819..62318947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    62305296..62362457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)