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GIHCG GIHCG inhibitor of miR-200b/200a/429 expression [ Homo sapiens (human) ]

Gene ID: 100506844, updated on 8-Nov-2023

Summary

Official Symbol
GIHCGprovided by HGNC
Official Full Name
GIHCG inhibitor of miR-200b/200a/429 expressionprovided by HGNC
Primary source
HGNC:HGNC:52649
See related
Ensembl:ENSG00000257698 AllianceGenome:HGNC:52649
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 58.4), bone marrow (RPKM 20.9) and 12 other tissues See more
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Genomic context

See GIHCG in Genome Data Viewer
Location:
12q14.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (57931449..57936164, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (57899813..57904526, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (58325232..58329947, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902948 Neighboring gene uncharacterized LOC283387 Neighboring gene Sharpr-MPRA regulatory region 12928 Neighboring gene Sharpr-MPRA regulatory region 14680 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:58286906-58287406 Neighboring gene uncharacterized LOC101927608 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6564 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6566 Neighboring gene Sharpr-MPRA regulatory region 14765 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:58329372-58329872 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:58329873-58330373 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:58335219-58336028 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_29909 Neighboring gene ATP23 metallopeptidase and ATP synthase assembly factor homolog Neighboring gene zinc finger protein 100 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Other Names

  • lncRNA gradually increased during hepatocarcinogenesis
  • lncRNA-GIHCG

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038269.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BU621729, GD141386
    Related
    ENST00000664635.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    57931449..57936164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315939.2 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    165751..166469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    57899813..57904526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)