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LINC02475 long intergenic non-protein coding RNA 2475 [ Homo sapiens (human) ]

Gene ID: 100506827, updated on 12-Oct-2019

Summary

Official Symbol
LINC02475provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2475provided by HGNC
Primary source
HGNC:HGNC:53418
See related
Ensembl:ENSG00000251350
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LVCAT1
Expression
Restricted expression toward testis (RPKM 4.4) See more

Genomic context

See LINC02475 in Genome Data Viewer
Location:
4p13
Exon count:
2
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (44016861..44022061)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (44019079..44024078)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit B4 pseudogene 12 Neighboring gene uncharacterized LOC105374438 Neighboring gene potassium channel tetramerization domain containing 8 Neighboring gene uncharacterized LOC107986275 Neighboring gene Yip1 domain family member 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • liver cancer-associated transcript 1

Clone Names

  • DKFZp566F0246

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131958.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC114757, BC042992
    Related
    ENST00000512678.1
  2. NR_131959.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks a 5' exon and contains an alternate 5' terminal exon, compared to variant 1.
    Source sequence(s)
    AC114757, AL038573, BC042992

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    44016861..44022061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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