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LINC01132 long intergenic non-protein coding RNA 1132 [ Homo sapiens (human) ]

Gene ID: 100506810, updated on 17-Jun-2024

Summary

Official Symbol
LINC01132provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1132provided by HGNC
Primary source
HGNC:HGNC:49444
See related
Ensembl:ENSG00000227630 AllianceGenome:HGNC:49444
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01132 in Genome Data Viewer
Location:
1q42.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (234724042..234731643)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (234114778..234122379)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (234859789..234867390)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373209 Neighboring gene uncharacterized LOC105373208 Neighboring gene Sharpr-MPRA regulatory region 7312 Neighboring gene uncharacterized LOC124904556 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234845164-234845664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234845665-234846165 Neighboring gene Sharpr-MPRA regulatory region 10113 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234859006-234859568 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234860133-234860695 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234860696-234861259 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234861823-234862386 Neighboring gene Sharpr-MPRA regulatory region 12432 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2765 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234869880-234870380 Neighboring gene uncharacterized LOC105373210 Neighboring gene uncharacterized LOC107985364 Neighboring gene long intergenic non-protein coding RNA 2961

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Biological, clinical and population relevance of 95 loci for blood lipids.
EBI GWAS Catalog
Discovery and refinement of loci associated with lipid levels.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038856.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK125357, AL160408, DA725133, DA854106, DB067123
    Related
    ENST00000437601.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    234724042..234731643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    234114778..234122379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)