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TMEM30A-DT TMEM30A divergent transcript [ Homo sapiens (human) ]

Gene ID: 100506804, updated on 10-Oct-2023

Summary

Official Symbol
TMEM30A-DTprovided by HGNC
Official Full Name
TMEM30A divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48985
See related
Ensembl:ENSG00000225793 AllianceGenome:HGNC:48985
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See TMEM30A-DT in Genome Data Viewer
Location:
6q14.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (75285014..75291864)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (76461836..76468686)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (75994730..76001580)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24757 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24758 Neighboring gene cytochrome c oxidase subunit 7A2 Neighboring gene transmembrane protein 30A Neighboring gene uncharacterized LOC124901344 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:75981645-75982844 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:75994172-75994744 Neighboring gene filamin A interacting protein 1 Neighboring gene high mobility group box 1 pseudogene 39 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:76043771-76044425 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:76044426-76045080 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:76071935-76073134 Neighboring gene uncharacterized LOC101928540 Neighboring gene small nucleolar RNA U3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040081.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL709712, DN915856, EF565086
    Related
    ENST00000607221.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    75285014..75291864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    76461836..76468686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)