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NUP50-DT NUP50 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100506714, updated on 13-May-2022

Summary

Official Symbol
NUP50-DTprovided by HGNC
Official Full Name
NUP50 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:50502
See related
Ensembl:ENSG00000226328 AllianceGenome:HGNC:50502
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NUP50-AS1
Expression
Ubiquitous expression in brain (RPKM 3.7), adrenal (RPKM 3.2) and 25 other tissues See more
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Genomic context

See NUP50-DT in Genome Data Viewer
Location:
22q13.31
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (45133758..45163781, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (45618247..45648274, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (45529639..45559662, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene PHD finger protein 21B Neighboring gene Sharpr-MPRA regulatory region 3533 Neighboring gene uncharacterized LOC101927551 Neighboring gene Sharpr-MPRA regulatory region 5228 Neighboring gene uncharacterized LOC105373064 Neighboring gene nucleoporin 50 Neighboring gene KIAA0930 Neighboring gene microRNA 1249

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038956.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    Z82243
  2. NR_038957.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate 5' exon, compared to variant 1.
    Source sequence(s)
    BC044653, Z82243
    Related
    ENST00000609284.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    45133758..45163781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    45618247..45648274 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)