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PCAT6 prostate cancer associated transcript 6 [ Homo sapiens (human) ]

Gene ID: 100506696, updated on 14-Dec-2021

Summary

Official Symbol
PCAT6provided by HGNC
Official Full Name
prostate cancer associated transcript 6provided by HGNC
Primary source
HGNC:HGNC:43714
See related
Ensembl:ENSG00000228288
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PCAN-R1; KDM5BAS1; ncRNA-a2; KDM5B-AS1; onco-lncRNA-96
Expression
Biased expression in testis (RPKM 17.7), skin (RPKM 2.8) and 6 other tissues See more
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Genomic context

See PCAT6 in Genome Data Viewer
Location:
1q32.1
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (202810946..202811913)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (202780074..202781041)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene lysine demethylase 5B Neighboring gene cytochrome c oxidase subunit 7C pseudogene Neighboring gene solute carrier family 25 member 39 pseudogene 1 Neighboring gene MGAT4 family member E, pseudogene Neighboring gene tubulin alpha 5, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • KDM5B antisense RNA 1 (head to head)
  • KDM5B antisense RNA 1 (non-protein coding)
  • noncoding RNA-activating 2
  • prostate cancer associated transcript 6 (non-protein coding)
  • prostate cancer-associated noncoding RNA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046325.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC098934
    Related
    ENST00000417262.5
  2. NR_046326.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC098934
    Related
    ENST00000425295.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    202810946..202811913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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