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IQCH-AS1 IQCH antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100506686, updated on 25-Jan-2022

Summary

Official Symbol
IQCH-AS1provided by HGNC
Official Full Name
IQCH antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44104
See related
Ensembl:ENSG00000259673 AllianceGenome:HGNC:44104
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in kidney (RPKM 1.4), thyroid (RPKM 1.4) and 25 other tissues See more
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Genomic context

See IQCH-AS1 in Genome Data Viewer
Location:
15q23
Exon count:
10
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (67403611..67521844, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (67695949..67814182, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene alpha and gamma adaptin binding protein Neighboring gene ribosomal protein S24 pseudogene 16 Neighboring gene IQ motif containing H Neighboring gene VISTA enhancer hs358 Neighboring gene Sharpr-MPRA regulatory region 12968 Neighboring gene Sharpr-MPRA regulatory region 13361 Neighboring gene chromosome 15 open reading frame 61 Neighboring gene mitogen-activated protein kinase kinase 5 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 5 Neighboring gene uncharacterized LOC107984718

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • IQCH antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040051.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC016355, AC106000, AI743092, AK124301, BC047537, BX332831
  2. NR_040052.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon, includes an alternate exon and uses two alternate splice sites, compared to variant 1.
    Source sequence(s)
    AC016355, AC106000, AI743092, AK124301, BC047537
    Related
    ENST00000561232.5
  3. NR_040054.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks four exons, includes an alternate exon and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC016355, AL598736, BC047537, BX093700
  4. NR_040055.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks five exons and includes two alternate exons, compared to variant 1.
    Source sequence(s)
    AC016355, AW204237, BX093700
  5. NR_040056.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks five exons and includes two alternate exons, compared to variant 1.
    Source sequence(s)
    AC016355, BX093700, CK822922

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    67403611..67521844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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