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MRPS30-DT MRPS30 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100506674, updated on 23-Nov-2021

Summary

Official Symbol
MRPS30-DTprovided by HGNC
Official Full Name
MRPS30 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:53420
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BRCAT54
Expression
Broad expression in brain (RPKM 2.3), thyroid (RPKM 1.7) and 21 other tissues See more
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Genomic context

See MRPS30-DT in Genome Data Viewer
Location:
5p12
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (44744328..44808793, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (44744430..44808895, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2224 Neighboring gene RNA, 7SL, cytoplasmic 383, pseudogene Neighboring gene mitochondrial ribosomal protein S30 Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • breast cancer-associated transcript 54

Clone Names

  • DKFZp313K2435

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109862.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC093297, BG612611, BM679915, HY237908, HY316932
  2. NR_109863.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC093297, BM679915, BY797234, HY237908, HY316932
  3. NR_109864.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC093297, BG612611, BM679915, HY123663, HY237908, HY316932
  4. NR_109865.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate internal exon and uses an alternate splice site at the 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC093297, AL691871, BM679915, BY797234, HY237908, HY316932

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    44744328..44808793 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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