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PTPRN2-AS1 PTPRN2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100506585, updated on 10-Oct-2023

Summary

Official Symbol
PTPRN2-AS1provided by HGNC
Official Full Name
PTPRN2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40488
See related
AllianceGenome:HGNC:40488
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in lung (RPKM 1.4), spleen (RPKM 1.3) and 18 other tissues See more
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Genomic context

See PTPRN2-AS1 in Genome Data Viewer
Location:
7q36.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (157854585..157866092)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (159045178..159055871)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (157647277..157658784)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375615 Neighboring gene uncharacterized LOC105375614 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157410237-157410746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157414918-157415418 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157415419-157415919 Neighboring gene protein tyrosine phosphatase receptor type N2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157453869-157454368 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157461523-157462416 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157462417-157463309 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157468593-157469378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157469379-157470162 Neighboring gene MPRA-validated peak6875 silencer Neighboring gene OCT4 hESC enhancer GRCh37_chr7:157525094-157525825 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157586225-157586786 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:157588757-157589258 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157589794-157590294 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157607483-157607984 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157619124-157619632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157621801-157622674 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:157637302-157638501 Neighboring gene MPRA-validated peak6876 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157666565-157667400 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157679661-157680178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157689624-157690124 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_97987 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:157725255-157726454 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr7:157748173-157748781 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:157763321-157763527 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157775009-157775954 Neighboring gene uncharacterized LOC105375613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157782013-157782612 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157783213-157783812 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157783813-157784412 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157791993-157792738 Neighboring gene NANOG hESC enhancer GRCh37_chr7:157792768-157793272 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157800540-157801519 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157799559-157800539 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157802753-157803315 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157808367-157809026 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157809027-157809686 Neighboring gene Sharpr-MPRA regulatory region 9999 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:157843588-157843764 Neighboring gene MPRA-validated peak6878 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157859561-157860514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157870087-157870586 Neighboring gene Sharpr-MPRA regulatory region 5343 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157904657-157905158 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157903511-157904242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157926052-157926594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157929890-157930772 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157935377-157936298 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr7:157940629-157941180 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:157941181-157941730 Neighboring gene D7S22 minisatellite repeat instability region Neighboring gene ReSE screen-validated silencer GRCh37_chr7:157954594-157954842 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:157957089-157957613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:157987247-157987747 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158030483-158031396 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158037992-158038492 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158053060-158053970 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158069190-158069934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158073864-158074606 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158075350-158076092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158103424-158103936 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158108910-158109661 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158109662-158110412 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158110413-158111164 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158118125-158119111 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:158122041-158122238 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:158127303-158127803 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:158134077-158134576 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:158134599-158135798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158142965-158143559 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158144749-158145341 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:158166900-158168099 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158190023-158190630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158206830-158207354 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158207355-158207879 Neighboring gene MPRA-validated peak6880 silencer Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:158230280-158230780 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:158261913-158262077 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_98034 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158289893-158290448 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158292995-158293940 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158300949-158301460 Neighboring gene Sharpr-MPRA regulatory region 11620 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158319662-158320162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158320163-158320663 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158322953-158323722 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158323723-158324491 Neighboring gene microRNA 595

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038966.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011899, BC034557

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    157854585..157866092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    159045178..159055871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)