Format

Send to:

Choose Destination

SPTY2D1OS SPTY2D1 opposite strand [ Homo sapiens (human) ]

Gene ID: 100506540, updated on 25-Jan-2022

Summary

Official Symbol
SPTY2D1OSprovided by HGNC
Official Full Name
SPTY2D1 opposite strandprovided by HGNC
Primary source
HGNC:HGNC:44122
See related
Ensembl:ENSG00000247595 AllianceGenome:HGNC:44122
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPTY2D1-AS1
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Ubiquitous expression in bone marrow (RPKM 23.1), testis (RPKM 16.4) and 25 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SPTY2D1OS in Genome Data Viewer
Location:
11p15.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (18599789..18609874)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (18621336..18631802)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene UEV and lactate/malate dehyrogenase domains Neighboring gene Sharpr-MPRA regulatory region 13786 Neighboring gene uncharacterized LOC112268073 Neighboring gene MTCH1 pseudogene 2 Neighboring gene SPT2 chromatin protein domain containing 1 Neighboring gene uncharacterized LOC105376578 Neighboring gene SRSF3 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
putative transmembrane protein SPTY2D1OS
Names
SPTY2D1 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355570.4NP_001342499.1  putative transmembrane protein SPTY2D1OS

    Status: VALIDATED

    Source sequence(s)
    AC112694
    Consensus CDS
    CCDS86186.1
    Related
    ENSP00000489616.1, ENST00000635674.2

RNA

  1. NR_038360.4 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC112694

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    18599789..18609874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center