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LIFR-AS1 LIFR antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100506495, updated on 6-Apr-2021

Summary

Official Symbol
LIFR-AS1provided by HGNC
Official Full Name
LIFR antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:43600
See related
Ensembl:ENSG00000244968
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 1.5), brain (RPKM 1.4) and 23 other tissues See more
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Genomic context

See LIFR-AS1 in Genome Data Viewer
Location:
5p13.1
Exon count:
10
Annotation release Status Assembly Chr Location
109.20210226 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (38556786..38671216)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (38556888..38671318)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene EGF like, fibronectin type III and laminin G domains Neighboring gene EGFLAM antisense RNA 1 Neighboring gene uncharacterized LOC105374732 Neighboring gene LIF receptor subunit alpha Neighboring gene uncharacterized LOC105374735 Neighboring gene microRNA 3650 Neighboring gene OSMR antisense RNA 1 (head to head) Neighboring gene long intergenic non-protein coding RNA 1265 Neighboring gene transmembrane protein 126A pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • CTD-2196P11.1
  • LIFR antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103553.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC010425, AC091823
    Related
    ENST00000500733.6
  2. NR_103554.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and contains multiple alternate 3' exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC091823, BC045578

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210226

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    38556786..38671216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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